Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10000184 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10000184 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40502
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (86.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40502

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (86.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F033006	Metagenome / Metatranscriptome	178	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000018412	F079979	GGA	MIREEEDDTMQDMRALIVFEIKQEVEKLLQKIEDAKVPVTDEWTDGVNAGLGWAQRILRKDKSAT*
Ga0114977_1000018415	F012770	GGA	LNEFDPNEPPESYCHECDTQFDNSFDLVDHTLDEDEEFDPYYILPNGMKLLLGSLLRFMYNHSNEPEQIELIAQSTYVTLFAAEMGFDMIDELVEDMVVKSAMQNLEQNIEKLLSKDTDEEGGA*
Ga0114977_1000018418	F008237	AGG	MIEWERIERWDYVVDSVATEYHRKFEIDFDDIRQSLYQWFIEHPNKLNEWEAIGEKDAKNLIYRSLRNQALDYCQRWKAKSGGYETSDLFYYESDMVEALLPSVLRGDFNLTAQLNLGRPGRPSAPNEGGNLMAMMIEVDFAFWKLSKDDRKLLFLRYAEAMHFDDIAKEMELGSEDTARMRNKRAIKKLIHKIGGFKPYRDEDTEPQDSLES*
Ga0114977_1000018440	F033006	N/A	MEWMENGFFDHLDKFANSLGYENFAIALPLAMVPWKSPEDRDVFIMTLTGEGVKGGESSTFNPLAVK*
Ga0114977_1000018447	F001706	AGG	MNLHQIQAHPEYVEGCFGCKIGTLELGTGDATRDISDKKWTSELQAYRDARAQGIQPAGTTRAHVEAAYEASATLGKAYNSETMPKTKDINKKSTEVLKELGAI*
Ga0114977_1000018455	F001599	AGGTGG	MQETVSIAWCDNGNVDGKFMHGVTDVLLKSGITFDTSLRSQGNQIARQREKVIRYWYEKNKSDWLLWVDSDVVISVDKFKLLWDNKDAEKRPIVTGVYFTTDTPEDPLMVPLPTVFKFAEKPGTIGIQRIHPLPENEFIQVGAAGMGFVLMHKNAITKILETIPGAPLFTEVGVDKSFMGEDIYFFALCDKAEVPVWCHTGATVPHMKRFSFDEHYYKAFFGGNQAQKKSNLIVPKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10000184

Overview

Ecosystem & Geography

Associated Families

Sequences