Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10000389 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10000389 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29716
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29716

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000038913	F012214	N/A	MSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQDILSTIPNLPIFMDGGFRGEAQWVYIIATRDSSNRGRWYLITTAGISNITPGVGANPAAYLTGYTEDINITTSWVGNVFFINDGLTSPMYLLSTATEIYKYDAAPDNYVWNYDLDVSATRAAFVRNFCSPNVGNILIAGNLTKDYITSGLTINYPTTVRWSQAFANTGVPATWVPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFRNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNQMLSYRYDLQIWNAPKDIANACMGAEAPIFTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINSAAIPALFERNNMVLQGSQGPVPYSSKVYIHRVLPEIAGTGVINITLGGANSTAQPATYGQTGYVNIVTDNPWVTTQQNNVRTVSVKVESNDATDAWNLTALNWQATVVEDAF*
Ga0114977_1000038920	F005087	AGGA	MALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSSLVLIGDFIGPNMMGPFAAVLAVSSTTITVNDPDAVWTGITYPTAILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTNAQGMAPIPSDMCFPILFFQESPPSNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGDSVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK*
Ga0114977_1000038921	F000857	GGA	MNDDEVRINEEYYSGGILEAGIDGVFRHNDKLFNEVKSGTWSQTFKTPNIDYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQEKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPTIPTK*
Ga0114977_1000038925	F003521	AGGA	MKSLVLNIREYFNRRTKGSDSHKEADVSRKTLVIENGECASRLIKNEDFALLFNLYRFDLLGRLEECRTDPERIENAFNIAGVRDFIGFIEKTEFLGKVAKKSIN*
Ga0114977_1000038926	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQANQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDEEEQVNTPQEDMNEAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKSQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQAQFTQMMMQLDPSAPELFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKLAQAKSQQGPSAEQKEIQSKTDLNNAKVQESNTISALNIKKAEDIDTDNMFEALAAKRDKLTAVQID*
Ga0114977_1000038929	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDRTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKKELIPEDDLPPLPERPADLPDIESRIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYTWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA*
Ga0114977_1000038935	F001915	AGGAG	MEWRLAHPLDDVDDIVEMADTIFGVEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDKLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWGRTAELLKEMK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10000389

Overview

Ecosystem & Geography

Associated Families

Sequences