Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10000401 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10000401 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29354
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (28.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29354

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (28.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000040114	F093876	N/A	MNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDSAIVIDVPYNQFKKNFQELKSNIITNDYIISRG*
Ga0114977_1000040117	F072341	N/A	MSKELAASVQQSFNRSLSAEEKAIAECISSPKLHSLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALIMTFPEIKRAEPTDPVNVLHADLERWNDGKHTWVEISAPYNCQRLFKQGIYKKSMWEPEVWARFEDIAKQKVEAKFKASNRVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKE*
Ga0114977_1000040123	F066778	GAG	MRAGAHTFKITPMNYSREPNWQKLKPTIDWDEQEEKLANKLENYINQNKQIVMNQQIVKQQKFVRTWNGPSGEIHYFDLVLENGEIGQIGVKDMNSPKIAVGATLHYTVEERTGPTGKKSTNFKMQNPMQFSGTTSAPSGAVNSAPNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKALTNESADDEMPF*
Ga0114977_1000040128	F070109	GAG	VSLTTNEVRSLLKLKAERDYLQGQVTLLSKSDKIASSVIKDQQKAIDAYSISNEQKAQQLVKVQQELYKEAARKESWRNVALIGIPISFVGGIIFNILF*
Ga0114977_1000040129	F077297	N/A	MTHQTKTQIKAAAVIVVALSICITIQCLYIALKDSKKAIQGYERRADRATHVIDSLEATNVQRMQEIAQLNMQIEHNTKRYEANISAIDSLDRNGLKRAMRNLLTSLAGERYPGESND*
Ga0114977_1000040140	F082692	N/A	MTNPQQDIIYSMTLLRSGVQGKSQEFKHASGTYHARLKVWQIRAINYTILIGLLSLITYTIYSVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10000401

Overview

Ecosystem & Geography

Associated Families

Sequences