NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10003279

Scaffold Ga0114977_10003279


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10003279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10378
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000706Metagenome / Metatranscriptome926Y
F004050Metagenome / Metatranscriptome455Y
F007223Metagenome355Y
F025974Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000327910F004050GAGMAKKKVIDLDTYSQLDQYAICMHEFYKSLRRAGFAVDMCLAIITDRDAYPDWLMPSIPDRVDRLPYEDDDED*
Ga0114977_1000327912F007223AGGMFDPSFGDMVVMIVLSGLYFHLGRIVGIRVGYLQGRKSVRDYYASKERVRV*
Ga0114977_100032796F025974GGAGMPNPTRIEVNCTTGEVLEIELTDAEVAELAYQAELAADAKAEEDRIAAQRALDKAALLERLGITADEAALLLA*
Ga0114977_100032799F000706GGAGMTQTDFFNLYFASLAVVGGLSGFVITHLLSEIKRLHARVDEIYNILLER*
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