NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10006195

Scaffold Ga0114977_10006195


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10006195 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7601
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015591Metagenome / Metatranscriptome253N
F021520Metagenome / Metatranscriptome218N
F026250Metagenome / Metatranscriptome198Y
F030424Metagenome185N
F041731Metagenome159N
F095380Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000619510F030424AGGAGGMIDVNQFAELELRVNDLQNALTRVIKERDNYKDTADSLFRELEACRTTLTQANSDISRLRVYLAQGAEL*
Ga0114977_1000619514F095380GGAMSKDNELALDLFMLGYERNELVHMLNEATSLIESLRNELDSIKSELHVTQQEL*
Ga0114977_1000619515F015591N/AVRYRPNRYAEISQTTLTNDYEDPIAEFIEASAEGLCTGYVVIANIERINGDQSFWVTTLRNQTASTSLGLLESASAAEKYRIARSFNHHQDEDE*
Ga0114977_100061952F021520GGAGGMSHDEMRTMVVVRWHDAHSATDTWTPIDDIGTDPCEVVSCGFLLPTSEGGKEGHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLAPSK*
Ga0114977_100061954F026250AGGAGGMTNRQKQAAVGIGMAIMWGFWLMPTAEDLPDTKPATPLEWKLFIALNFVLIVYVHILNICEHQRQLRIEEKQRYWERMETRARYNHPTNK*
Ga0114977_100061957F041731GGAMNAIEGRDLDQPGDEQAVTYIRERLNSIQGADRARMAMLITQAELAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITSQKYSKPGEALANLDVKQAQRFADACHGIARDLLNLIYIPETNQFHIEEQAS*
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