NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10007278

Scaffold Ga0114977_10007278


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10007278 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7027
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008619Metagenome330Y
F023109Metagenome / Metatranscriptome211Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100072783F024113GGAMAIFNKNTLAQVSGFDNPILAGELVWNQKTFWNLSFVNMATNLPLNLTGATIDATIVRRQLSNVQDTRNGLTFDIANYDPPPTAIPLTITNVEDAEGTCTLVINQDTWDLINSDPQLEINAIDPVGFSGRIIVSFPAVGDVPEDDSVIFLLFIVRSDGVVVV*
Ga0114977_100072786F023109GGCGGMIRLATRNDIPRLLEIVEAYAYENPIKKLSEQNNHFPRYVEELLFSIISGRGFIYIDSHLRGAIVAYRTGNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDDTANEMLKNGTVDIVITSVSANGPLIDYRKRGYAAIGASFVKE*
Ga0114977_100072788F008619GAGGMSFQTIFEIQQSMTVDNRRMVGQQVARSGYITVAQYMTAVPWVFTITPHDYLYYPQVRDVIQAIDNKDRQLAESISFASSNLSWFVAMRGTATTAILNGTPAANTQTLALTSNGTFKAGDFVMVGGYVYKVTADSAGSSINIHRPLIGAPTSGAALALGTACTFSVVAEVCPTYTLNPMANGAYVQWDQPFVFREYIT*
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