Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10008608 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10008608 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6472
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (57.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6472

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (57.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000860811	F029049	N/A	MSQLAKVILDRSQEITAHKVGLERTIVRNANTGDASNFGQVYKNWHELVWQEAEGASAETAVANYFGDYAFVPKIHNAHEEADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGWSPVYLLLGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSQYGV*
Ga0114977_1000860812	F030767	GAGG	MAYKTKCRLCAKVTEHIERVVTDNLPPYVKALQCVKCGVMGIVMMEDVNETS*
Ga0114977_100086082	F027413	GGAG	MTWLPEWRITIGTTVYDTVLSVTMATGRDDIDLQCNAGYARLEIVNTNNSAFDIDVTDVLTLELKNSAGTYIPVFGGAVSDFGISVRSPEETGFVTIGNILAVGSLAKLTKALFPDALAKDEDGNQIYDILNELLINSWNEVAPALQWQDYDPTTTWANAENVGLGEIDQPGLYEMISRAADPYSSYNLCAQIAQSGLGQLYEDKAGRVCYADADHRTTYLSANGYTTISANYATPSSIKSILQIGKIRNSLVFKYGNNYANTASAVDNDSVATYGRYQRDVTSNLHNLADVNTVMARDLGLRAIPREQLQSLTFRLDSNNLPDAERNKLIDVFFGQPMIINDLPINMFNGSFNGFIEGFAIKATPAYVDMTLTLSPTDFSLVAPQWNTVSPANLIWTGVNATLEWENAFGGLT*
Ga0114977_100086086	F002269	AGGAG	MKEQAIAIGKSYLRSAIACAAALYMSGISDPKVLANAFIAGLIGPLLKAVQPSEGQFGVTK*
Ga0114977_100086087	F015095	N/A	MERAQLVIGITLGVITILGLWAGLIRKLVIFYLSELKPDGNGGHNLAGRVERIEQRVDRIYEILLEDRLAK*
Ga0114977_100086088	F023592	AGG	MNSLDILVGLGACALGFLFMVIGYSIGYREGHGEGFVRGRAIAKALKESEAI*
Ga0114977_100086089	F007029	GAGG	MGFLDGYEDVNARIKRFRSEFPSGRLVAFIESFDIEKGTILVRAEAYREYEDMVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLTPSLEHNSRPTVQDMEKVETLPASADPWSTKASIEDMATMATAIVEIGTQLGGELVAEAPRCPHGTMIWAEGKAKSTGKPWAAYKCTEKLRANQCTPYWHVLGSDGKWKPQL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10008608

Overview

Ecosystem & Geography

Associated Families

Sequences