Basic Information | |
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Taxon OID | 3300009158 Open in IMG/M |
Scaffold ID | Ga0114977_10009322 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6235 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (17.65%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F013298 | Metagenome / Metatranscriptome | 272 | Y |
F017485 | Metagenome | 240 | Y |
F027416 | Metagenome | 194 | N |
F054034 | Metagenome | 140 | N |
F103248 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114977_1000932211 | F017485 | N/A | MNNELKRKDILEGITFILMIVATLGMFCLLYEVTELRELTKSASNFRTIRK* |
Ga0114977_1000932212 | F054034 | GGA | MLTISTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTSAMTEFISIKTINTLDRMREQLIYIKEKYKTK* |
Ga0114977_1000932214 | F027416 | N/A | MLTIENIQKLEGLKVGANGKVWKIIRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIKRAVERQDMVDVYNFLRLIKKEIERAVC* |
Ga0114977_1000932215 | F103248 | N/A | MLTIQNIDKIINPKSPLPYKWHISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYKLYKNFDQSKINRWLSLHQISPYFIKQAIDKMLNE* |
Ga0114977_100093224 | F013298 | N/A | MNIREFYVKNYPSDDMGKGINPEATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQRWLSPIKKPLIKK* |
Ga0114977_100093226 | F000785 | N/A | MRVTNKKGMKFDCTRLMRWAEEKLGPSKCTAIAFTWESDEESCGWYDWDETIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK* |
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