NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10009322

Scaffold Ga0114977_10009322


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10009322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6235
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F013298Metagenome / Metatranscriptome272Y
F017485Metagenome240Y
F027416Metagenome194N
F054034Metagenome140N
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000932211F017485N/AMNNELKRKDILEGITFILMIVATLGMFCLLYEVTELRELTKSASNFRTIRK*
Ga0114977_1000932212F054034GGAMLTISTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTSAMTEFISIKTINTLDRMREQLIYIKEKYKTK*
Ga0114977_1000932214F027416N/AMLTIENIQKLEGLKVGANGKVWKIIRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIKRAVERQDMVDVYNFLRLIKKEIERAVC*
Ga0114977_1000932215F103248N/AMLTIQNIDKIINPKSPLPYKWHISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYKLYKNFDQSKINRWLSLHQISPYFIKQAIDKMLNE*
Ga0114977_100093224F013298N/AMNIREFYVKNYPSDDMGKGINPEATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQRWLSPIKKPLIKK*
Ga0114977_100093226F000785N/AMRVTNKKGMKFDCTRLMRWAEEKLGPSKCTAIAFTWESDEESCGWYDWDETIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK*

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