NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10052787

Scaffold Ga0114977_10052787


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10052787 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2516
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F006984Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100527871F006984AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKITQVSYSNPVFSFNNIHSYKDDGITDEEYACQPNR
Ga0114977_100527872F001125AGGCGGMGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNQLADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV*
Ga0114977_100527874F001043AGGAGMSDYKDGFEDGYKFAREELMEKLAEIDIADIDSWILDRLAEMIEGGNL*
Ga0114977_100527875F000311GGAMYFELTAPDRLSLEMAYWDAQIIGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDRESTGYKER*
Ga0114977_100527876F000980N/AMSVGACIILDMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTDCTLLSVEDATIPYTDTPLTKEETMEESTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYEDSDDKDTLRAIAEALSIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIQIDDTEVCHVREA*
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