NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10088918

Scaffold Ga0114977_10088918


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10088918 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1882
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052582Metagenome142Y
F079703Metagenome / Metatranscriptome115Y
F081069Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100889182F079703GAGGMIDPNKLQYFTMAAWMRGYASGLDAHEHSTLVYKLNKAADMLDAVWGKYQEEQG*
Ga0114977_100889183F052582AGGAMSKPKTPEPLYRQYTPEEDRGKTMVSKYYRVNQNMDGLGVSLHPYNVECNIRIDFDLDGGIYKVEWSNKVLSERKPK*
Ga0114977_100889186F081069AGGAMSDRQWIIFNQLGGAEWLRTIITKKAPMPKQYYDKLLQEKLND*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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