NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10127362

Scaffold Ga0114977_10127362


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10127362 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1531
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_101273622F013634N/AMSNCNRTEAMPIQLAPLVGAGLGALQQSKIDKALAGEKIYTKPKTIFGKLIGGVSGRTAAAEASASVKTAPINEKVMNSLQPTSSNLDPSLRQSFPVTGGVQFGTQAKSRPWLPYAIVGGIVAIFYFMRGKKGRRRRY*
Ga0114977_101273623F031456N/AMALIGTFPASASAVFNLDFLPEKVLVQNTANSQQALSNLSVVTSGVQLFSITSIARITALAKFDSGAILGLDNTTGSYIRLATGRINKATTITGTNSVAAVRDFYAASTNLSNIARRAVEQSINPSANATFDNFEALFFDATNLLRAQITFSNGFTDEYSPAELLALYANYHVADTQGKLDGLTCIDADSGAGLIAQVVLFNGSGGSTVVLKSDYVQL*
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