Scaffold Ga0114977_10627104

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114977_10627104

Scaffold Ga0114977_10627104

Overview

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10627104 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	577
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005322	Metagenome / Metatranscriptome	404	Y
F018509	Metagenome / Metatranscriptome	234	Y
F057760	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_106271041	F057760	N/A	KLQTKLKSDVKLSRSQVIKTLVNEKARTLNGKLK*
Ga0114977_106271042	F005322	GAG	MENLSSLESDARPLTPEQKLWRAVFMQAIQDTFGICTVAMSRDEHREAKWFGRVYNQDFIELCEFAGFNPEQTFQKLKRYDLIKKGIIWNYTTNGKRKFADVAPIN*
Ga0114977_106271043	F018509	N/A	MSGKIICPKCNGNGFVYSFSHDDRKKMPMDCDYCHNQGEVDITEDVIKDLEETKG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.