NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10000001

Scaffold Ga0114978_10000001


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10000001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)309593
Total Scaffold Genes319 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (29.15%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F009382Metagenome / Metatranscriptome318Y
F009453Metagenome / Metatranscriptome317Y
F010014Metagenome309Y
F013277Metagenome272Y
F014361Metagenome / Metatranscriptome263Y
F015306Metagenome255Y
F015835Metagenome / Metatranscriptome251Y
F016250Metagenome / Metatranscriptome248Y
F022821Metagenome / Metatranscriptome212Y
F034079Metagenome175Y
F046855Metagenome / Metatranscriptome150Y
F079583Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000000110F022821N/AMGGESPNKSLCGIEMTSYLVESDVIIRAVDHPFPNRVVLGAFSTAEQAYHFIEKYLADTKDLHTYFTRQSICSKEVFESYVDNERIVSFNVVLGQFEDMIYVRKVSS*
Ga0114978_10000001108F007255GGAMKNCKWRADKTHVFFSHELKMMPVWFPWIFVGGVLFIVLSFVGAKYKDKEYKNIQFLQDFISGSILIAFTGVLVPDLFPVMDLPTSLPNFSGMMVDEMELQVGPPRLMGR*
Ga0114978_10000001119F079583N/AMAGVGSEFLYHLVVNNIAPIMASSVVGIYTSYFSGRNAPTPTLVRSDIDDERELDLLQMDRMLKWMSLVFEDSFVPIEKPGEEPPTPIVDDTHKAYKKELYSIYVTICSDFKQYQNWKKYNSTIWMFSSYRNKNTKGLARKILGDVKLFHEGLKMFSMFDKL*
Ga0114978_10000001170F015835N/AMASSFFKQFGAARKVKEDYEKQIIANLQHNGMEKAIIQIQNGRIQVKDTREANQLSLPKVEELLHGYYRQRGGSDETINIMTFIKANRGYTTRKTLKQSGTPTGPTGGNQIV*
Ga0114978_10000001228F016250AGGMSPYQILLLILVVLSLVALFYAFFYSKGLILHNPFLDKNLLKMGMEKPVIWLYYDTSDVSSREWYDFGARSSRALNLPFLNLCYESIVQQNKDRYRIEVIGGLAGAAELLGGWNHLPPGLRDPIAPVNETELNYLRVAILAKYGGLWLEPYCVCLKPFGSLPEDKTVFFGTDLDETYAGSAGTTIPGFRAIWTPKPDHPMFKEWAAVCYERVAKKRGGDQIRGDVKWDFVRFTKDYVHTGLVVDPAAEGMRKKNGKRIQLEDLLASNTDGKLPFDLCDYTTYIPFPWTELRDREMFGWFLRMSETQIMESDLAVKYLLQKSLKHSM*
Ga0114978_1000000123F010014AGGMAQPVYPDSRTRSAVQAFPMPQFVGRTRREYDTKDSINSRQFEHWQTDGKHMEYDRPDMNRQAPFYDMMPNTSRTSDRSYRAQPRYDVEGNRGVENSYFDKYDTTSDSRNMTRELRASVYEDKQTEYTKESGKLLERNFDSRWLDVTVMKQQAHAAEELRPKMDDIRLFYRNQPASSK*
Ga0114978_10000001284F034079N/AMATIHASSGQGALFELVARGVKDNYFVKDTKDSIFPYDARYESSVHHLAERRTMVPLADAVFGNSFEVEIDPYGDVMTECAIEIDLPSWLPYLPVQPNGQPSPPERANGLYSITDLGGRSYGYVNYVGYFLFEKLQFYQDQFLIQEWSGDSLLAKQMTEGSLNRSFLDQLKGGALETTDSTTGLTTARGLQIRATPGHLRIILPLPGMQCPGDGGFPLTAVPWQTFRIKGTLRKLEDLVVCSDSTVFKPAPWNVPSMNYTFTNGSTYTFAPLSILQMAKPRILLSTVQHYVPSKVQEELRSKPIEIPFRRQFDNYFTFGELDFIPLDKGGVAAVTRQLDGRHPTERMVWFFRSQNAIDINRLDHWYNDFFDSHAPNAAQPYTTPYGEFYYDLKLVIAGKDREELYTPMVWNQLNSLSKDEKGNVMHIGSMNWSTGEKYGTMYPAPRQPEGTVNFTTADRPTLYIELANINTNAILAQRKAEMRLFTEGWNVYTIKEGRGRLMFAS*
Ga0114978_1000000130F046855N/AMVAMSPLEGFFQIFNTNPYFIGIMMLILNLGGRFITLEVSKKQEQFLQHPWVRRALIFTVLFVATRSIMVAFWATVAVVLILGYLFNENSSLCLFGNGGAPGSSCADGPAPGEGMTPEEKEILQRLSAKAQRYQPTESKKSETDSEEDVLPTHVYAANLSLLRT*
Ga0114978_10000001315F013277N/AMQRYTPPKPAPLPADFDEFYASLTPEEKELHALATEWLASSYFIQWTHMYTKWKKEKTKK
Ga0114978_1000000138F009382N/AMEEYITNQFTRDTYPNLFNRPLFGTEYRGAREAALAPVKDIMPVQDVRYPAFAAPLEDGRLVTDYRPQCSKNVRTGQQFYTKKWMINHGSELMDESRKRQVEWSGAALPMANTVPPPAAVVHSTPFYSEVNATNLMGGLGVERANASAPDLFGTFSYEPTISEMQNNRKNIGMTVREEGGRNSKRGGF*
Ga0114978_1000000157F015306N/AMSRSITNTTPQFQKQRVPRFRRLDNDHISAMESLFTKFPFLKERVEIHMPFHRAKPTFSSGSVWLWPKFDKRPVGYLIFMDGFAPCIWYPERQEGMTFRWLLPPTFCQSGPTVCFANILTGESVLQIEDLAIWQGEDLWSTQVFSERWKKLNEFWTSLPSDQPLLAFQPQIVKPIALKDWSLHYNSAIYWIIQPDHCRQPRWYWKDTVTVPDHPQVEFIAPILKRSHEVVSTLCAYCTPYSNSVLPDTYSLLSQEQTSLGFASIGTIQLSMDLRKRFTEKIEGLPVEVTWNDNFKKYQITRILPVNTPIATAGFFHHLHSS*
Ga0114978_1000000171F009453N/AMASAGTLLSDLDGKSPVLSKDDDLVNKILADMNMPSSSNPIMTAPPPPSGNGNRMIHSPNPNSTYPMATDPATATAHMIGKDYPSTADFANLMHAPSYSHGGSSFANVSPQVMAPPPTLLETKGNMYSDILSQIKQPILVAIIIFVVSLPFLNVLIGHYLPSLLRIGGDVTTAGLAVKSLFGGFLFWFIQKVLVPLMVV*
Ga0114978_1000000187F014361AGTAGMSVLTAFTTQLVNLFDELCQTFPDDKEIKMATEAVKGAKKINPRLILDLFMNHVYKDCSTAIKERNAPLFRQIAQQKISTQFNEMISALAIFDKYWDTMGQKNQDVIWQYLKVLCILAEKANVA*
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