Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10000413 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10000413 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35772
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (86.79%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

35772

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (86.79%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001629	Metagenome	660	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000041311	F012214	N/A	MSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQEILSTISNLPIFMDGGFRGEAQWVYIVATRDSSNRGRWYLITTAGISNITPGVGANPAAFLTGYTEDINITTSWVGNVFFINDGLASPMYLLPTATEIYKYDAAPDNYVWNYDIGVSATRAGFVRNFCSPNVGNILIAGNITKDYTSSGLTINYPTTVRWSQAFANTGVPATWVPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQRVRDYFFGNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNKMLSYRYDLQIWNAPKDIANACMGAEAPVYTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINSAAIPTLFERNNMVLQGSQGPVPYSSKIYIHRVLPEIAGTGTIDITLGGANSTAQPATYGQTGRVSIVTDNPWVTTQQNNVRTVSVKVESNDATDAWNLTALNWQATVVEDAF*
Ga0114978_1000041318	F005087	N/A	MMGPFAAVLAVSSSTITVNDPDGVWTGITYPTTILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTDAQGMAPIPSDMCFPILFFQESPASNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGDSVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK*
Ga0114978_1000041320	F000857	GGA	MNDDEVRINEEYYSGGILEGGIDGVFRHNDKLFNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEVIRQKCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKRDKADKILFYAIVNEHYSDFVCHPTGKIPLPYNPTIPTK*
Ga0114978_1000041325	F004695	AGGA	MLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQSVMQEMMAPEEDQTPQEGMDSAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSEENRLTRQQLIGQAQAQFMQLMMQLDPSAPEMFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKLAQAKSQQGPNAEQKEIQSKTDLNNAKVQESNTISALNIKKAEDIDTDNMFEALAAKRGKLSAVEID*
Ga0114978_1000041328	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDRTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKRELIPEDDLAPIPERSADLPNIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYTWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA*
Ga0114978_1000041330	F040590	GAGG	MSAYGKVISGGTAMTNGLTKGINKKLSAFADSHKRSAMLATAVGKTFNQNPLSDPHHNDVNMNAKKSFTTPKLPSKV*
Ga0114978_1000041334	F001915	AGGAG	MEWRLAHPLDDVDDIVEMADTIFGVEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDTLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWIRTENGLKDMK*
Ga0114978_1000041347	F001629	GAGG	MNLNQGKLAQALVDRLLDDIHEFNDTLYMATVIGVLEIVKQQLINDSLEDSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10000413

Overview

Ecosystem & Geography

Associated Families

Sequences