NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10001661

Scaffold Ga0114978_10001661


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10001661 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18679
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000888Metagenome / Metatranscriptome847Y
F035302Metagenome172Y
F049622Metagenome146Y
F059960Metagenome / Metatranscriptome133Y
F081323Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000166119F000888AGGAMKQYFAQINDDNVVTNVRVVTQDFLEANPDRYTGRWVETFYDTAGKTYAGVGFIYDDATQDFVQPPPTIPNEP*
Ga0114978_1000166122F049622AGGAMKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAEKLAKASVDGNLTAQEISDAFGGNGKQIAKKKAAK*
Ga0114978_1000166123F035302AGAAGGMKRPYTGNTDGLAEGERKGLAVFIKELCALYPALWNNGSFVNRSMRGKQGSLSVHATGRACDLSFRFMAKEKRGIAEGGRKQAMEAIDFVVKNADAFGLEAILDYFPMPHGRGWRCDRGGWSIYTKATIHGAPMGDWVHFEIAPLLADNPEAMREAFAKAKQQVA*
Ga0114978_100016616F059960GGAGMNKQIDALLEERAAYVKRNLPKRVESVDAALRELGFDHKYMSKEPQIETASIEVEVEKSVLKRGKKKKA*
Ga0114978_100016619F081323AGGAMANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKETDK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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