Scaffold Ga0114978_10004386

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114978_10004386

Scaffold Ga0114978_10004386

Overview

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10004386 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11428
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (44.83%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F085063	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000438611	F085063	AGGAG	MKPRIASRGPEIDMEQCVRQAGGGRYDMVLIGAQRLRELKRVHREDTTRYVTCVDALHEIQAGQVNLVDYLAKVK*
Ga0114978_1000438626	F040990	N/A	MNYYYEIDSKYDGTVFGDKWRYWCMYNCSPADKGKMCFKTHDDFVARSTRVWLENANGVYQVHPAWHGHRSVDPHEFTLVKLKAKTIKWWTGE*
Ga0114978_1000438628	F034448	N/A	MYVNNYTLPRPADSLLDQCHAVYINDPAFRMWAMKKYCTENKLSLVWSELVETSDVSAYFDEACAFYFIDARDATLFSLKFR*

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