NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10008051

Scaffold Ga0114978_10008051


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10008051 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8286
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020509Metagenome223Y
F028744Metagenome190Y
F031377Metagenome182Y
F039000Metagenome164Y
F045551Metagenome152N
F055432Metagenome138N
F056339Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100080511F045551AGGAGMTEQRELELLRPYVAACGEFVTKNAALEKQLKAIDRLLLEVLMGDTDPMQAMINRQKIKDEYEQS*
Ga0114978_1000805111F056339AGGAMPIYKYDVCFPNSQSVIRTFPSLVRARDFMRIMSADDLPFLVMPWDENSSPLIVRRVKTPRKYHTQKAVKLDIIGPSQQKG*
Ga0114978_1000805116F020509GAGMSNPVTPFRNNLFGSRGMDIQAALDYVDQLATASTDPVAVQTAARVLLNTIESAVTQSQGPSPVEEALFAIIDKRIAVLQINTQVEINASIDDWMDNNLRDKMMDILANEDIDDDISNWMSNNFDITDYNVDDAIESWAENNLDEKISEAVNNLTFTVNVN*
Ga0114978_100080513F028744N/AMYEFLYECDELGLQLKCFFEYEPAEVGSIEPMSGMKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRNVV*
Ga0114978_100080514F031377GGAGMITNANDFISVDRINQRLTPFNTGKVQIGLLYQPPPPEMTDSEEIIQSVLLGTGSIHNEPPLWPVILGSCLLACLLIYFVG*
Ga0114978_100080515F039000AGGAMTKRTDTTDKDIEQIMDDAQVLLNFCSNTFVKPADAWFACLVSSAILTAELSVPVDKFLEGFEHAYSDAMKAKNAMKGASYDH*
Ga0114978_100080519F055432AGAAGMKKLTIEQRAFLEAYDNAVASAPRDEVVRFLTVTSEERSSRAFYDSMSDIYTSIFDAWEVWNQALKFARADKGMTVGTLSAALANLPRDLPVLIWDAGTRLGIAHIDDSFVEDENPRLELNTDRDD*

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