NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10010727

Scaffold Ga0114978_10010727


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10010727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7060
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003212Metagenome / Metatranscriptome500Y
F007691Metagenome / Metatranscriptome346Y
F018135Metagenome236Y
F093237Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100107272F000821GGAGGMNKEYLEAKAKLCLDQAEIDIQQQEIARAIKNLERANSAMSRLFGIEEGENE*
Ga0114978_100107275F003212GGAGMKDRYLVTLEVETYDGDPKNWDWSHLLVNDKTRFIESQFKGRVLPTSEGESK*
Ga0114978_100107276F007691GGAGMDTIEQLINEIHEDNYSHLEFDENMGGEGCECAIHTTLNTIVKYRDKGEVE*
Ga0114978_100107277F093237AGGAGGMGYKYTLAEAGKMTNQELLNALLAREVAPRTIIGTGYINARQVAIEYLQGEIAKEGEGK*
Ga0114978_100107278F018135AGGCGGMVFVRLPHSGAYVLYQMVGEGAGKYLFTRTYYGYTIKQAKAQFKLALKEAK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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