Scaffold Ga0114978_10294396

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114978_10294396

Scaffold Ga0114978_10294396

Overview

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10294396 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	995
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_102943961	F029049	N/A	RVSSVAKVILDRSQEITAHRVGLERTIIRNADPTDASNYGQKYNNWHELVWQESESVGAEIAVAHYFGDYAFKPAIDNGHDTADVGENIEVKWTKHANGHLILQNRGPGRPNDVAILVTGFSPCYLLLGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV*
Ga0114978_102943962	F030767	GAGG	MAYKTKCRLCGKVTEHIERVVTENLPPYVKTLQCVKCGVMGVVMLEDVNDAQ*

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