NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10004639

Scaffold Ga0114966_10004639


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10004639 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11800
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014848Metagenome / Metatranscriptome259Y
F019477Metagenome / Metatranscriptome229Y
F041568Metagenome / Metatranscriptome159Y
F044486Metagenome / Metatranscriptome154Y
F074569Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_1000463911F014848GGAGMQYYDELAQYEREGFSIIVDKTYEDMHPRDTFDDSCHNIDEICEKIDNGTYEWFMLRVRVLVEGLELSREHVGGCLYYDVREVLTDGTAEDLIDSAMTDAKKQVYRLSRVFAGLSEQVDREGACA*
Ga0114966_1000463912F044486GGAGGVLDNVLKWSGMALVIAGALCTSLRIDPLNILLLNAGALVYMIWALRIQEMNLVIVNAVLLAIYAVGLMQVPKPL*
Ga0114966_1000463913F041568AGGAGMFTTDNQTALKDELNLMFKEQGAAFTAGYSNMMVQEMLMFLPKRKQKEFIQQVAAFNGRQLVTVKNCLTGQEVEIRREDVGTCNDPSRELFHTM*
Ga0114966_1000463914F019477AGGAGMGHWEFGEFRIGRLFHCNGNDYIKQSTRTARLLSNGRIFYFGKNEVIHAIAY*
Ga0114966_1000463915F074569AGGAGMKEQLLALAYEQEDDVFGSSERDEFDCLIALIEDGTINTFEELARYGVERSGE*
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