NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10026239

Scaffold Ga0114966_10026239


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10026239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4346
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F048101Metagenome / Metatranscriptome148N
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_1002623911F011914N/AMLKPHLQIMITDNQIKAMSENELAYFYYCLNTEWNSLNMGYDFDWYVLRSFRNNTIQNILNKHSANLTDENKGITIEILKKLESNI*
Ga0114966_100262393F048101N/AMKKKNFKNVKDFLKTCSEDEQEYIYGLFNNAPAEDLIELLFEHLPAKNTIKEIKGYRAEIKEEMEWDDAEAKKLNKRKCDCDFVGCKGC*
Ga0114966_100262399F071966N/AMSLLGIAFDVKGWIFRPFYLLLGALYFLVLLSLLGTLYIVLFLRTTLEKVVKDIEKERKKYRRVN*
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