NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10040922

Scaffold Ga0114966_10040922


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10040922 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3343
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_100409224F000263GGAMNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEELSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVRDENKKDGH*
Ga0114966_100409225F001019AGAAGGMSTYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETENLTEAVLFCYNLGKDFTVRTLAEWNERELAYVN*
Ga0114966_100409227F009685AGGAGMQMTNEHIDAVLAEAQGLLWGGSETENIAAHNLISKLIQDRMSEKILK*
Ga0114966_100409228F000852AGGAMTTKREYLKAQGITVGVRGRFSGAAKVAIQEAISKGVTFTDPQPVIKKAK*
Ga0114966_100409229F013414AGGCGGMKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYTDELDTEDGIYNSGLTSEGLFLANELNQTLTKLIKTYKWENIKLPVDPDKFIKRLPKVDEQSYRHSWLHEEQRDPILMNHPFI*
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