NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10115130

Scaffold Ga0114966_10115130


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10115130 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1789
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_101151301F013413N/ANGCMRSYSATTVLYHVQNINLNRKEKAMTENEYNETFDMQMEKEHQETLRRMQEFRLIGEQISKMPETPRHVLEIEVRYLMGIISELETRVKDLESEARRLEMLLTRAN*
Ga0114966_101151302F014620N/AVQTNQLEMFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRARVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGMRRLTRAGNEAIVWRCV*
Ga0114966_101151303F055728GGCGGMRRSYDPYYGNREQLRAQSEHGMKVARERDTLKTENAALLEEIKELKAILKYIQEGE*
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