NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10494804

Scaffold Ga0114966_10494804


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10494804 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061542Metagenome131N
F069669Metagenome123N
F102505Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114966_104948041F069669N/AQKEATNYSKHRGISQPLSYVLFKRRNAGIDKAWVIQDLTQWLKDKQ*
Ga0114966_104948042F102505N/AMRRTSQDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMPVPEGIITTTDILQPVLEVVEEVTTTEENKDEVKSN*
Ga0114966_104948044F061542AGGAMICEICKAGGELNRIGQFKRATTMHKKCKEDCGCQHKTGPEAGSRAMAMAEPMRT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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