NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075423_10009185

Scaffold Ga0075423_10009185


Overview

Basic Information
Taxon OID3300009162 Open in IMG/M
Scaffold IDGa0075423_10009185 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9460
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002113Metagenome592Y
F104952Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0075423_1000918513F002113GAGMENLLAIEAETKFLTATDRSFEQTLMQELLRIFQEAELLFGPRDASYKLSEPRITECASSRTYIFPPLKTTRIYLSRDSRTKRWLASLELAHEAIHVLSPVGFGSTPTILEEGLAEWFAQRYVGRVHGLSFERGANPKADAVMLAVSNLLAKNELLIKRLRTRQPVISKIDEKLLVEVAGIELSHAEFLCTGFKSYWRTAPKHSWA*
Ga0075423_100091855F104952GGGGGMQLNSNKFRQAIGCGLSVIVLLITCHQSASGSNQPEVSSIFAVVVKRIELKTASLNQELTLRTISDVVVDGRVVIPSGSRVVGHIVEVATKGQGSEQSILAIVIDKAVLESGGEISLQGIIAAVAALQDGSLSSDPTYGMMHSNEPKMVGTGPTGAAARPGELSPSSKVESTATLGTARINGEMHKGLLLNAGSQGAIGFSGLSLTWRLTTPPAVTVFSSNRKEIKFEAGTQVLLRIARPELKEIR*
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