NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10006302

Scaffold Ga0114970_10006302


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10006302 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8498
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F059952Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114970_1000630215F059952N/ALTLYQEIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYLC*
Ga0114970_1000630217F001125AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANSVEAARPRWTDESYATRICVSQIVGEDWTQETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLSMV*
Ga0114970_1000630221F000980N/AMKDGFGWPSGVMQLTCPCNSRCTLVSVEDATIPYTDTPLQTKEETMEETTTPAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKHNGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALDIELIKEVLFTASIEVSGTYSYNILENDYDMDLESEVTDALYADSNNGNIQIDDTEVCNVREC*
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Institute for Fundamental Biomedical Research
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