NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10026326

Scaffold Ga0114970_10026326


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10026326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3897
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F010603Metagenome / Metatranscriptome301Y
F060708Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0114970_100263261F000635GAGMTLTEIAQYAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
Ga0114970_100263267F010603AGGAGMANEFVRSTRKAKNKAIRFDTQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0114970_100263268F060708N/ADSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQFTPDSIKRAALRRKKYGE*
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