Scaffold Ga0114970_10030223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114970_10030223

Scaffold Ga0114970_10030223

Overview

Basic Information
Taxon OID	3300009163 Open in IMG/M
Scaffold ID	Ga0114970_10030223 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3607
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002099	Metagenome / Metatranscriptome	593	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100302232	F000166	AGG	MANIPTPQDAALFAQNVKKWQQVLSLGDWRIEKGIKPAKAAMASVEFTPTARLAVYRLGDFGAEKITPESLDRTALHELLHIFLHDLMSVATDPKSSDEDIEMQEHRVINLLENLLSKDSHGID*
Ga0114970_100302236	F002099	N/A	MRWLIALVLTLSIQSTSKDLCSVREFYSIAWGIHDPTERHKLMAEWLTKHQQLCKSTDFIVIWNNMSEWAGNSDSHQLRALVIHGYKEALEREKK*

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