NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114975_10000063

Scaffold Ga0114975_10000063


Overview

Basic Information
Taxon OID3300009164 Open in IMG/M
Scaffold IDGa0114975_10000063 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69441
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (25.81%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029103Metagenome189Y
F037070Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0114975_1000006334F029103AGTAGMTLINSAMRAAVEGYTNPGGAEAYKAPPAYAEALAALFGFVLAILLLSFIGMWLWNYSVVPLFEFARPAKSIFQILGLVLFITLMHP*
Ga0114975_1000006351F037070N/AMSSALAPLNPLGTPMEKGSPVGSAALQDPANGNSRGFFPAVCLSTHWDPTRIYSRTVPTSLVSLPVDFRPYTKVCLDYRTSAPEQAAPQVPDDLVFPSGGDQYPPTRYINSIDKESLLRRLDRPLGTCDPEQYQPPRNGDMYVDRMLVPRTPKNTSRFIEELSMPQALMRVGTYSCRAEADQKNWDRSPRMFNNTTKQDRYKAPASVEPPRPSVWNGAARCMDTPLAGHQTQYGNRAWGSGSTPVCELR*
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