Scaffold Ga0114975

Basic Information
Taxon OID	3300009164 Open in IMG/M
Scaffold ID	Ga0114975_10000273 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009164 Open in IMG/M

Scaffold ID

Ga0114975_10000273 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38787
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (67.80%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

38787

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (67.80%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F043944	Metagenome	155	Y
F063624	Metagenome	129	Y
F095158	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000027317	F095158	AGGA	MKQTYIVEFNTTNTQDGWSRIEFTSITKALGFISLMVKRGTHCQIFQG*
Ga0114975_1000027331	F063624	N/A	MAQSAVGAIRAGCQMLSEGKQFIDDAKSEVEGIVGQVKETYETVTGLWGWITNLFSGEQNGKSEKQTVLSSTPETQAKPVEKKASRKPEPELSYEEFQARAVHDICENLKVYFEAIRQLKIHCLELDEEALTTEKVADSAIDRIEIQWQMKQLSAQLKQSMIYGTPESLGLGAMYAEFLAKQDEIVEEQEVARELKLKKDRDNAWQHDHRKQILMAKLGYVIVLTVSALWITALYSAL*
Ga0114975_1000027336	F001991	GGA	LAIFNKNTLTQVSGFDNPIISGELVYNQKTFWNLTMATAGVPVDLTGATISAQIIRRQISNLIDTRYGLSFDIADYTVSTPTAVDLTVTNRNNAAGLFTLVIDESAWSVISTDPQLDINAQDPVAFSGRIKISFPSSGTTPAQDSIIFLLFLVRSDGVVN*
Ga0114975_1000027337	F000324	AGTAG	MKMTKHITPKHQVTYDGASLNVYHANKGEGLPRHEHAYSHLTMCHAGSCLVTKEAKSLIMNKDTQPVNLVADEWHEIEALEDGTVFVNVFAEGKY*
Ga0114975_1000027342	F002085	N/A	MNVIAPVDGTSSIRLADFVRVNTGTDIYRFTTAPSNTLVSAVDSTAFSAVGTLMKIGDVQRDIKSTANETTVTLIGIDTAMLGWVLGQSVKGSQIDMWHGFYNEANQLITTGGTGGLYQFFSGIITSFTISETWMEEARSYVGTITIAASAIQLILQNRIAGRYTNNNSWQFFNSTDTSMNRVNFIETINYEFGKNV*
Ga0114975_1000027343	F000934	GAG	MSLQAILSISESVGINDQRFVGQTISRNQKITTSEILTVVPFAFELKPMNYLLYSQNRGLLNTLRIPDKAITQYINFGSTGWVNYIKYQGDMTSAEISACQWQTSSAAKVLVLGSLPSISSGAYLFKIGDFVQVGLYSYIVTDNVLRGGAATVNVPVHRSLISALTSPVACVAGEYGTTVSMGGSTYTGVTFPVILREYPTYTLIPMTNDSFISWNGTFKAFESVL*
Ga0114975_1000027345	F043944	N/A	MIFNGHTHDTLADIDDVTMSQLQTMYADGMVGNNGVLEVLGTLTAGVFNYMRTANSSPYKLANILGNAYDYIYPPLTEQDKKQAVNNSLLAFMTQAPGFQQDRFKHG*
Ga0114975_1000027352	F002997	GAGG	MAIARFENITINNLTFGKSAFGEQSTTQTLWFATRARVQSVANSVKISDKYRVYSDIVNFTLNYTPNTKQMIDNQNLYSINWRGFDWRIDNVRESDDRMTVMILCVRNDPVVAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114975_10000273

Overview

Ecosystem & Geography

Associated Families

Sequences