NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114975_10003155

Scaffold Ga0114975_10003155


Overview

Basic Information
Taxon OID3300009164 Open in IMG/M
Scaffold IDGa0114975_10003155 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11078
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F009462Metagenome / Metatranscriptome317Y
F043407Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0114975_1000315512F001957AGGAMNSVDMANNLIFRAKNLTEFTVTTEVPDDFRFNGEIPFDMQIKDSIIIANVWAVDFNEAAKRLDDFLGTCK*
Ga0114975_1000315520F009462AGGAGMELHESVRDTYKKIVIRNDIGFRLTLTKHEVSKPTGLFSVNMIQESLKTDGTISDSQTYNFFMTKEELQALASGLTA*
Ga0114975_1000315521F043407N/ALVGSTVSVGYGATPPTHNLPGYVGASQPLTIGQVYTTNNTSLGGGSSGQFLTSGSNGTGWTNLADNVLVAKNNPPELEVKGRMILNGRDVEERLNTIEKVLQIPERDAILERKHPKLKKLHDEYIKELSKYRMWQAIKGDE*
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