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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009165 Open in IMG/M |
| Scaffold ID | Ga0105102_10004036 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5240 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F006659 | Metagenome / Metatranscriptome | 367 | Y |
| F024551 | Metagenome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105102_1000403610 | F002038 | N/A | MADIPKGIEKIATTVPKQYALLLFLDGFPYVEMTARKSADFMTDLNSWKRKTYPSLARSDVRYFTLAPNGEIKELTFTPVRQ* |
| Ga0105102_100040362 | F024551 | N/A | MTIIRPDSLPRFWWLFPWSIARQLHKNAVALRELADNQSTTITNQANILGRYMDQNRELKAEVTRLAHSREHWIAKHDRAYEVAMHNEKVIREMEERRR* |
| Ga0105102_100040363 | F000957 | GGAGG | MSSFKHLDGMLGLLSELYEINCRVECGDICSAKTAIQSKRMEKLLNHYHEALSEDGASKISLQAYAAAGGWVGITYSYEVDGFEVSGSQVPRRV* |
| Ga0105102_100040367 | F006659 | N/A | MRTKSGPTYLLTLSPMKKDNKPSPDYRVIADSSYIVLPDQKVARLLTPTVRGGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAEQASK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |