Scaffold Ga0113563_10001002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0113563_10001002

Scaffold Ga0113563_10001002

Overview

Basic Information
Taxon OID	3300009167 Open in IMG/M
Scaffold ID	Ga0113563_10001002 Open in IMG/M
Source Dataset Name	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15248
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie, Old Woman Creek
Coordinates	Lat. (^o)	41.384	Long. (^o)	-82.513	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031059	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0113563_100010029	F031059	GAG	VPDAPAGFTTRTACVIHGAAPDRVAQIGSSDRITLRPNKHGTLVTGRPGDLVIDYAAELDGPVFDIMYSAQTGWFSVTVYRGLDQTTRWDNRPGTNPGYPRADDILGATTPITILDVLDVPASAIGYAEA*

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