NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10271933

Scaffold Ga0114996_10271933


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10271933 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1336
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027199Metagenome / Metatranscriptome195Y
F055492Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0114996_102719333F027199GGAGMNHLREYIKGAIEFQKENFDVSDMDEEEIFECVMENVVSMVGDYDFTDYNKED*
Ga0114996_102719334F055492N/AMGENEEQTVSFEVTFTYGKEEQKEFGSIEEFIEEMIDQNSGDFNDVDSWEIE*

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