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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009174 Open in IMG/M |
| Scaffold ID | Ga0105241_10122106 Open in IMG/M |
| Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2099 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F052754 | Metagenome | 142 | Y |
| F055137 | Metagenome / Metatranscriptome | 139 | Y |
| F055252 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105241_101221061 | F055252 | GGAGG | MISVRTSLRISAVLLFALALSAFAASAGDFTGTYKLGAAAAAGNDVQITIMLNVANNTSSSIGNATISLHEPNAGRIIYGQLSGLSLAAGKSTHVNGSFRVPQGLYESWQKGSSPAM |
| Ga0105241_101221062 | F052754 | GAGG | MRFFFLVVTCFLGLLLFAKDTPKAILVSHNDIKGPIIGNAHVEDLEIFANGRVRYSESGNDRKTGTVSTRLTPAQLRRLTMLLNSKDMRAVPVEIPSQIRVADFDWEAQLHISHGSEQQSITVKNFYPLLNTQRPTYPKALIELECILRDVQANATKRPIHFEDEDEDWCREKKTE* |
| Ga0105241_101221063 | F055137 | N/A | REVDKPISRLQSPDPQSLLSPQLLINPSAFAVGPVGDREKCLPPLGVKLSSSVPADPGTAPGLFMGTLGLPPASAVSGGLALPPEVAQFGLICTTMIDWVSQASLNPLLSLNQDVSSVTALAFNSQTDSKANLAIADDPSLVIPDQTLQKSQLVPPVTGVLHGQGHVYIVP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |