NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105241_10687220

Scaffold Ga0105241_10687220


Overview

Basic Information
Taxon OID3300009174 Open in IMG/M
Scaffold IDGa0105241_10687220 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012683Metagenome278Y
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0105241_106872201F013213N/AMSMKSWVLHRVAGRSDLPPRDSRHLHEPDLDVDAAPRHGDAGAAADPLRAGADLGVYAPLIGAVRDELEHFVASHVRLHVVIAERDRFLLTSIGVRSPGGADARELLQQFMHEFRPEQVKRYLAREVIGRLPNAAVIDLSQFAGLADLESGERPGDDDEYRELLAALRTTPALPIARPYEVSVLGRWSEVDAPAPAFPRSRDGSAPTTPLAGRAVRFDVGDGAGT
Ga0105241_106872202F012683N/ARRAIVLIGDVSRVALLIDLSLPALLARVRAGDRVQPAWGRFTDRIAGYGLPTFPRVRHLRAPGPLATLVVAYRS*
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