NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105241_10699168

Scaffold Ga0105241_10699168


Overview

Basic Information
Taxon OID3300009174 Open in IMG/M
Scaffold IDGa0105241_10699168 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003166Metagenome / Metatranscriptome504Y
F086116Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0105241_106991681F003166N/ALFVARHSKNPSRKARGEAAMPGLNSSQSPTFYRVRIMDGHSASGLLVSAMGKRCIPSTQYWLTVDVCTAYRFPRSAALHVQVRLGEMGFMTVLEEIRD*
Ga0105241_106991682F086116GGAGMPARPEERVPVDLDIRVWGMAANGRGFSQRARTQNISASGARLCQIEHDLKIGDIIGVQAGEKKTRCKVVWARETRSIQKIEVGVQLLSRVECPWSPFLLKGDQLPSNLPPGRRRWARHKIAFPITLQDELTLVRVTATDVSGSGCYVEMLSPFPIGTGLCAELWVGSERVMTRALVRTCDPRVGMGIEFV
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