Scaffold Ga0073936_10000711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073936_10000711

Scaffold Ga0073936_10000711

Overview

Basic Information
Taxon OID	3300009175 Open in IMG/M
Scaffold ID	Ga0073936_10000711 Open in IMG/M
Source Dataset Name	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	52005
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (70.45%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055440	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_1000071125	F055440	N/A	MLALAALVPLAALNAADIPKSSNALQVFKAKLQTTVTGHLNQLLNADGSVVSLKGKTADGSEAMAFYLMFELTGEQKFRKAGICLADQILKDMRGTTFGVLPIKEKEKPDGKTIIGGGPPALGEYAASVAYILHKEGSRNDDLHYIANVLDRYPWNESGWWAATIDVTTGEPKEPTAKPSPINKTAAIAKAAGMISTYVREIDPELSARLKHKADTCIYSQVIPAQETDGFWHYSLSGNDPKDKDVLGYFMLTTRELMDLQKFNAAYRDEKLNAALRKAQAFAFTCIAPMTEPNTRATRPEHATRGTPSHYTLKEDSKRSFQLGPILIGGGYMDEGTNIMNAALDLFPFGDTGPAGAHAAEPSALILSGF*

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