NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073936_10221125

Scaffold Ga0073936_10221125


Overview

Basic Information
Taxon OID3300009175 Open in IMG/M
Scaffold IDGa0073936_10221125 Open in IMG/M
Source Dataset NameFreshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1312
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034443Metagenome174Y
F089755Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0073936_102211251F034443N/ATIFSSLSDKYIVVSCGNLGTDKDKITPRLFFVGIVGGWGTPVRLKGLANNGNLSLRYPGPNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKDLDFTKRYCINGINYLISEIAVTLNKSSIKSTQLKCFSAP*
Ga0073936_102211252F089755N/AMIDITETPNLISFAGNPVIFEGCSDNFILSCGAYAYFELAVSGVDTTIGHSFTLQFAGKTLVFKTAGVTGYDGYLFGVGYPGQSFNDFANNIYQCFIENYYIQKYFTIALDPIGMSQRKIILQARQPGADCSVMLSNVGVSGVGQGINIPGTDDVYQDYFSILCLVRDSYNNPIGEDLKPSDSMGCAGFDISDYLSSKFATWQMPRFELPELTGNVKVHGWDYLLKYRASFAESIAGLVKGLRPDGWKYALAGGLNHELLTSLNENNLEYFSIPANKLKFLTWLPTSK
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