NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105242_10637185

Scaffold Ga0105242_10637185


Overview

Basic Information
Taxon OID3300009176 Open in IMG/M
Scaffold IDGa0105242_10637185 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1035
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019405Metagenome / Metatranscriptome230Y
F049825Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0105242_106371851F019405N/AIAPQIPASLREALTQATSDFESATTVVVDRRCELMLENAQIVTKEALSKLNARSEEVQVLVQGAVNFGLEEFRREAQLKVNMALAETAERVVSALSLLEADSRATCDARRQALEAEVARSAEQAAEQFRKGMKTFVSSCFVAAVGAVDEHSKATLEGFLKDNGKILDEAPSQPPANDEDEVIRDADSSPVAIRKRTRTGQNDRIG*
Ga0105242_106371852F049825AGGAGMRKFLTLFAVLFLDATLASGGPKPQPGNILSHTSVSCGSKKSKKQELDLLCQQYVVR
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