Scaffold Ga0105248

Basic Information
Taxon OID	3300009177 Open in IMG/M
Scaffold ID	Ga0105248_10000046 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009177 Open in IMG/M

Scaffold ID

Ga0105248_10000046 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	164800
Total Scaffold Genes	239 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	160 (66.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

164800

Total Scaffold Genes

239 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

160 (66.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F042051	Metagenome / Metatranscriptome	159	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105248_1000004614	F069394	AGGTGG	MIKKAYAVQMTYDVSDAEKTQAEQALLYFEHAAKMLQMASDHLDIMKTPFKDNPEMDPQEVMKARAAIRRFRDKAVDNFNKFKKAAFNCVNVMQIFSSDTQTLKLMKSFISSIDDLEVKVNKLVDLFADLEAKSFPQDVVKALEDIQKQCEEIDEIIDERIKNHIQTNILATSWVDNVSTDLQMNIEEKTPLIIDLFNQRQDQLNDIIKEKSSQSGN*
Ga0105248_1000004627	F071164	AGGAG	MRISEMLSAIASWLESPNNEAVLLAEYHEGSMKVVAESCVLAAALLKNAAEQVSEMEPPEESKITPQAIEEIAALAAAFDASGDPALKKQASVLDELLLSIAAPPVEGRKDLLDARTEELKKKYENPRKELHDTNKIGESEKAIDKSQMTKQYDILEAPLSTRYCPDHPGVQIARVGEHMWQCELDKKSYNFETGFELNNGAKVPGGDVAQQTQGLNVPYHAIFDTREGRLGYNKP*
Ga0105248_1000004636	F042051	AGGAG	MTSTFGEVSWNDDVFPGSEGKKNTNSKDLFLRLEEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVNCSAIHGSCPLCDLGDKAKPRWLIGVISRKTGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAADQKIKDEADLDDLKRRVTPPTADLVQKRLDKINGLTTDSAPAAGKKAATAKAAPAKAPAVSMTDDEDLNESFPAYNADNA*
Ga0105248_1000004690	F031713	AGGA	MSNKNITIDLKARKDIDGQTFYVGKVKAPMLIDCSIGAVFLVFVSDKGDEQLQIALMDNKEIED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105248_10000046

Overview

Ecosystem & Geography

Associated Families

Sequences