Scaffold Ga0105248_10753023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105248_10753023

Scaffold Ga0105248_10753023

Overview

Basic Information
Taxon OID	3300009177 Open in IMG/M
Scaffold ID	Ga0105248_10753023 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1099
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080177	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105248_107530231	F080177	N/A	MFLWEFESIINSNPNIKKMKKLTIGILTMVTMFVLSSCAKNVDDNLLEKSHKALLSAPSAVTITGDDYGCWYTSKIAVGKMSQIKNSYIWVIRNVDAKSIDPDPSVNYNSLYFGSNTQPFHSNPASKSVSDIRDWIISAIAELGGSDPVSGQWQCDIDSSNPDQINVTIYNNGDGCGNVETVFPNYGLAVSS

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