NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105248_12504872

Scaffold Ga0105248_12504872


Overview

Basic Information
Taxon OID3300009177 Open in IMG/M
Scaffold IDGa0105248_12504872 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)588
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001898Metagenome620Y
F009673Metagenome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0105248_125048721F001898N/ALQYGGFYELKEIGSGGYGTVYTAKYRNYSEEDMEETVVLKRFKRFDGMPEL
Ga0105248_125048722F009673N/AYDAYILWIEYSLLTNVRKITSLRHECTHIADWLGPTTSELTRVTLKKIVDEQNDQSFDFHQVNYFTCKQCNR*

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