Scaffold Ga0115028_10269286

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0115028_10269286

Scaffold Ga0115028_10269286

Overview

Basic Information
Taxon OID	3300009179 Open in IMG/M
Scaffold ID	Ga0115028_10269286 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1126
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.224	Long. (^o)	-82.304	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040476	Metagenome	161	Y
F041599	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115028_102692861	F040476	N/A	PFEDLEINTHLQDSRLLPVTSAGDTISRDFIKEYLEARLQEYLALGGLKELLDRRALILSGQKLPAPFYWDLWANLEHLRGTYLQWLQEHTIDVPNDDEEQEVDSDSDISWETD*
Ga0115028_102692862	F041599	AGG	MMVELRSGTNTGGQEPRTSEGRDPNIPEDIEVINQEDQMPNQGVQMMDPINQQGQPAEGAAQGVYVGGTYPATLARAAQGTSSYRPPQFAFTTPPARPLQEEFKSTKSHEEGDVSSTETGKPLPTPRRTFTFEAPMRPLDVARNMYLDYSAVQSIKFYNKGVEKLPGEAFNGKLLLTWLIQVQDKANMFTWTSILTINGRPLTQNFTKITMEEVRAHAQIYQDRSLREAQNSEMLIQCL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.