Basic Information | |
---|---|
Taxon OID | 3300009180 Open in IMG/M |
Scaffold ID | Ga0114979_10000594 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 23764 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002099 | Metagenome / Metatranscriptome | 593 | Y |
F026266 | Metagenome | 198 | Y |
F054861 | Metagenome | 139 | Y |
F079803 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114979_1000059412 | F079803 | N/A | MTQEVSHEQIYERLLAVESKVDNIDKNTEHVIKAFNAASGAFLVLEWIAKAVKPIIIIGAFFGTIYLVIDSKFNGVK* |
Ga0114979_1000059431 | F054861 | GAGG | MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRHLGDNWLLANHVQRKEQTQ* |
Ga0114979_1000059432 | F026266 | AGGA | MTIDTITFHFVGQLEDSGAIVTVQCQIDEDGDCRDLDSAMYQGIDVLEVISNDQRENLQWEASKAYKAENYEQLTIAHDHEHTLEAIYGLSKPSFNIR* |
Ga0114979_100005944 | F002099 | N/A | MRKLIVVLLSLGLVASTPSSSSDNCSVREFYGIAYTVHNPTERHQQMSRWLTNHQTLCKSTDMVVIWNNLSEWAGSADSAELRHKVVIAYKNAVLREKQ* |
⦗Top⦘ |