NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10006696

Scaffold Ga0114979_10006696


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10006696 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7580
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F029568Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_100066965F029568N/AMQNRYDLTDTHIEIYYNSTPEFERVRDICLQEDNWLRYNYTRENLVVEQHTGYGVVYQKSTGKPMVMGGVFNDGRYPKNVAKQINRLYTFPEFRMKHTDMTDGFRVTCSLIDALERVNSYDIYLITMQNRPRGGKRWWDTWVKHMDIASNGKWTLGQGYAQTCPWPVQKCWQNFVYYETVPGKFAEWNPTTINNKEWAEMPEGT*
Ga0114979_100066968F004256N/AMKFNYYYNQVPGQGEQRNNLIYTSLMSEDKKTFVQWYYNDTEYHRGQNEVVDPSKMEEKWLREVNYITQMRNKYPDLVPKIINIDFASRKLYLEVDGVDFWNRAECDIANYDKVVPDWQEQMLNIIQTYKDLGWYKYSMHPSSYFVVDGKLKSINYFFTYRENEGPISIADHASHIYSARQDIMRKQIEQMGLSWDRPESLKTLQMLCFESFRTNYPSDFIEKAKAIYD*
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