NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10026514

Scaffold Ga0114979_10026514


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10026514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3682
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F032572Metagenome / Metatranscriptome179N
F048121Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0114979_100265141F048121N/ALTLTQIYTNINIMNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSAK*
Ga0114979_1002651412F032572N/AMNSTYQYIANYINKPTIFCYILDRVVNNNPYLFTGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKE
Ga0114979_100265143F011914N/AMITNNQIKAFSEDELAYLFYCCKTEWDSLNMGYEFDWYTLKAFRNNMIQHLLNKYSANLTDENKPLIMQILNKLEQNK*
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