NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114969_10001418

Scaffold Ga0114969_10001418


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10001418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20367
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (56.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F007644Metagenome / Metatranscriptome347Y
F007921Metagenome / Metatranscriptome342Y
F066789Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0114969_100014181F007644AGGAGMTKSSHFIEYMKIHLISLNQDLEMNPESINVIDIPGQIMATEHLLSVATDIMNNNERVY*
Ga0114969_1000141811F066789GGGGGMSDAMCTKYGCDYKLDLDGQVTCSNCGAMGDDMPNPQSADNSVFERQIDFE*
Ga0114969_1000141818F007921N/AMIDWLVNRIFRWDPLRKAVFDEVHMYDGLAKRIEKYKDEKPTNLAWSEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWEEQWLHETDKSEV*
Ga0114969_100014184F000441AGGAGGMSDAYLNAQLDTAQKLLWGGSETENIEAHNIISKLIYDRIEQTE*
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