NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114969_10009147

Scaffold Ga0114969_10009147


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10009147 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7398
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y
F012666Metagenome / Metatranscriptome278Y
F029754Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0114969_100091471F029754AGTAGMSCNTVTFKRGTNFGSSTVFAPEAPPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQ
Ga0114969_1000914712F012666N/AFSCLISDPAVMTVLESGGYCERTQYSVRLPAVTASWSLPDGSIGASAALLSGGVPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ*
Ga0114969_100091478F001725N/AMASISNGVTCLYGVAGSISNLFVQSYSLSSSFNAEATVVNEDGLTKTHRLDDRKSEITIEGICKTSTMPLLGVALSFTLNAQTAYPAGSASVSFAGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA*
Ga0114969_100091479F001055N/AMGTASIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESARAPSDLPEGLGNFSCAVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDASCYDVTIGSEDEGVDERSWATSFSFDLLTVFPA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.