Scaffold Ga0114969_10140931

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114969_10140931

Scaffold Ga0114969_10140931

Overview

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10140931 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1522
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F041568	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_101409312	F014848	AGGA	MTQYYDTIAEFERDGYTVIVDKTYEDFNPRDHFESDDMDEILRKIDNGTYEWFMLRVRVLVEGLELGSAYLGGCLYEDAREVLTDGTAEDFIAEAMTEAKSQVYRMSKKFAELSDQVDRENACA*
Ga0114969_101409314	F041568	AGGAG	MFTTDNQTALKEELNLMFSEQGAAFTAGYTNQMAQEMLRLLPKRKQKEFVKQVAAFNGRELVTVKNCLTGKEVEIRRECQGTCNDPSRELFHTM*

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